Source code for pandas_plink

r"""Read PLINK files into Pandas data frames.

.. moduleauthor:: Danilo Horta <horta@ebi.ac.uk>

"""

from __future__ import absolute_import as _
from __future__ import unicode_literals as _

from pkg_resources import DistributionNotFound as _DistributionNotFound
from pkg_resources import get_distribution as _get_distribution

import _cffi_backend
from .read import read_plink

try:
    __version__ = _get_distribution('pandas_plink').version
except _DistributionNotFound:
    __version__ = 'unknown'

[docs]def test(): r"""Tests this package. You will need `pytest` installed in order to use this function. """ import os p = __import__('pandas_plink').__path__[0] src_path = os.path.abspath(p) old_path = os.getcwd() os.chdir(src_path) try: return_code = __import__('pytest').main(['-q', '--doctest-modules']) finally: os.chdir(old_path) if return_code == 0: print("Congratulations. All tests have passed!") return return_code
[docs]def example_file_prefix(): r"""Data files prefix.""" import os p = __import__('pandas_plink').__path__[0] return os.path.join(p, 'test', 'data_files', 'data')
__all__ = ['__version__', 'example_file_prefix', 'read_plink', 'test']